Hardware accelerator for biological protein sequence alignment on reconfigurable Networks-on-Chip.
Mehdi ModarressiFaezeh FaghihMaryam ModarressiPublished in: EWDTS (2015)
Keyphrases
- sequence alignment
- low cost
- field programmable gate array
- protein structure prediction
- hardware implementation
- pairwise
- amino acids
- reconfigurable hardware
- protein sequences
- functional units
- comparative genomics
- vlsi implementation
- dynamic programming
- embedded systems
- binding sites
- evolvable hardware
- biological systems
- biological networks
- network structure
- multiple sequence alignment
- physicochemical properties
- functional modules
- protein complexes
- protein function
- protein protein interaction networks
- interaction networks
- protein families
- ibm power processor
- protein interaction
- sequence databases
- drug discovery
- massively parallel
- molecular biology
- complex networks