Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation.
Tapio PahikkalaFilip GinterJorma BobergJouni JärvinenTapio SalakoskiPublished in: BMC Bioinform. (2005)
Keyphrases
- support vector
- biomedical literature
- learning machines
- large margin classifiers
- sequence alignment
- text mining
- biological entities
- protein protein interaction networks
- genomic sequences
- contextual information
- cellular processes
- protein protein interactions
- regulatory networks
- protein structure
- protein interaction
- homo sapiens
- knowledge discovery
- saccharomyces cerevisiae
- data mining
- protein sequences
- logistic regression
- support vector machine
- gene prediction
- kernel function
- nucleotide sequences
- biological processes
- sequential patterns
- gene expression
- protein structure prediction
- gene networks
- microarray data
- dna binding