Profile-Based String Kernels for Remote Homology Detection and Motif Extraction.
Rui KuangEugene IeKe WangKai WangMahira SiddiqiYoav FreundChristina S. LesliePublished in: CSB (2004)
Keyphrases
- remote homology detection
- string kernels
- protein classification
- protein sequences
- computational biology
- grammatical inference
- spam filtering
- support vector machine
- automatic extraction
- information extraction
- secondary structure
- suffix tree
- relation extraction
- kernel function
- multiple kernel learning
- kernel methods
- biological sequences
- edit distance
- psi blast
- transcription factors
- learning machines
- dna sequences
- svm classification
- svm classifier
- question answering
- similarity metric
- machine learning