Trade-offs using GAMID for the inference of DNA motifs that are represented in only a subset of sequences of interest.
Jeffrey ThompsonPublished in: GECCO (Companion) (2012)
Keyphrases
- biological sequences
- trade off
- dna sequences
- genome sequences
- nucleotide sequences
- rna sequences
- grammatical inference
- protein sequences
- motif discovery
- sequence data
- binding sites
- sequence analysis
- transcription factor binding sites
- motif finding
- molecular biology
- coding regions
- genomic sequences
- probabilistic inference
- sequence alignment
- biological data
- bayesian inference
- protein families
- dna computing
- computational biology
- tandem repeats
- structural motifs
- hidden markov models
- bayesian networks
- sequence databases
- comparative analysis
- long sequences
- free energy
- rna secondary structures
- multi objective
- belief networks
- tree grammars
- data mining