StrAl: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time.
Deniz DalliAndreas WilmIndra MainzGerhard StegerPublished in: Bioinform. (2006)
Keyphrases
- coding scheme
- multiple alignment
- rna sequences
- rna secondary structures
- run length coding
- probability distribution
- feature vectors
- objective function
- logical operations
- secondary structure
- image alignment
- sequence alignment
- probability theory
- genome wide
- inter frame
- pairwise
- neural network
- probabilistic model
- computational complexity