GORpipe: a query tool for working with sequence data based on a Genomic Ordered Relational (GOR) architecture.
Hákon GuðbjartssonGuðmundur Fr. GeorgssonSigurjón Axel GuðjónssonRagnar þór ValdimarssonJóhann H. SigurðssonSigmar K. StefánssonGísli MássonGísli MagnússonVilmundur PálmasonKári StefánssonPublished in: Bioinform. (2016)
Keyphrases
- sequence data
- sequence classification
- sequence databases
- relational queries
- nucleotide sequences
- sequence analysis
- database
- data structure
- genome sequences
- biological sequences
- query processing
- data sources
- profile hidden markov models
- binding sites
- biological information
- regulatory elements
- relational databases
- sequential data
- tree patterns
- high throughput