Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.

Yao-ming Huang Christopher Bystroff

Published in: Bioinform. (2006)

Keyphrases

pairwise
multiple sequence alignments
multi class
markov random field
graph structure
loss function
data sets
higher order
protein sequences
protein structure
sequence alignment
matrix representation
pairwise interactions
structural similarities
structural motifs