GPSmatch: an R package for comparing Genomic-binding Profile Similarity among transcriptional regulators using customizable databases.
Amy DongXiaomin BaoPublished in: Bioinform. (2022)
Keyphrases
- databases
- dna binding
- transcription factors
- transcriptional regulation
- binding sites
- high throughput
- gene expression
- database
- regulatory elements
- computational methods
- relational databases
- microarray
- transcription factor binding sites
- genome wide
- dna sequences
- similarity measure
- computational biology
- genomic data
- similarity function
- sequence data
- semantic similarity
- database applications
- sequence similarity
- user profiles
- biological processes
- gene regulation
- distance function
- data sets
- database systems
- cell cycle
- regulatory networks
- gene expression profiles
- biological sequences
- systems biology
- data management
- distance measure
- euclidean distance