A Parallel Algorithm to Cluster Orthologous Protein across Phylogenetic Genomes.
Sunshin KimChungsei RheeJungdo ChoiPublished in: BIOCOMP (2007)
Keyphrases
- parallel algorithm
- comparative genomics
- genome sequences
- evolutionary history
- human genome
- regulatory elements
- gene clusters
- sequence analysis
- sequence data
- horizontal gene transfer
- sequenced genomes
- sequence alignment
- phylogenetic analysis
- sequence similarity
- genome scale
- dna sequences
- phylogenetic trees
- binding sites
- protein sequences
- parallel computation
- gene expression
- microarray data
- cluster of workstations
- genomic data
- parallel programming
- protein coding regions
- shared memory
- comparative analysis
- protein function
- binary search trees
- transcription factor binding sites
- protein structure prediction
- protein structure
- genome wide
- parallel version
- gene expression analysis
- medial axis transform
- computational biology
- alternative splicing
- gene ontology
- high throughput
- microarray
- parallel implementations
- microarray data analysis
- motif discovery