LongPhase: an ultra-fast chromosome-scale phasing algorithm for small and large variants.
Jyun-Hong LinLiang-Chi ChenShu-Chi YuYao-Ting HuangPublished in: Bioinform. (2022)
Keyphrases
- computational complexity
- worst case
- dynamic programming
- detection algorithm
- preprocessing
- classification algorithm
- cost function
- k means
- computationally efficient
- computational cost
- np hard
- high accuracy
- optimal solution
- matching algorithm
- improved algorithm
- learning algorithm
- small number
- linear programming
- segmentation algorithm
- experimental study
- related algorithms
- experimental evaluation
- objective function
- similarity measure
- simulated annealing
- neural network
- significant improvement
- clustering method
- search algorithm
- reinforcement learning
- times faster
- memory requirements
- convergence rate
- estimation algorithm
- genetic algorithm