AnySeq/GPU: a novel approach for faster sequence alignment on GPUs.
André MüllerBertil SchmidtRichard MembarthRoland LeißaSebastian HackPublished in: ICS (2022)
Keyphrases
- sequence alignment
- gpu accelerated
- graphics processing units
- graphics hardware
- gpu implementation
- general purpose
- parallel processing
- parallel programming
- pairwise
- graphics processors
- dynamic programming
- protein sequences
- parallel computing
- multiple sequence alignment
- phylogenetic analysis
- real time
- multiple alignment
- comparative genomics
- amino acids
- protein structure
- binding sites
- protein structure prediction
- parallel implementation
- graphics cards
- heterogeneous computing
- parallel computation
- high performance computing
- secondary structure
- finite element
- parallel algorithm