Protein sequence optimization with a pairwise decomposable penalty for buried unsatisfied hydrogen bonds.
Brian CoventryDavid BakerPublished in: PLoS Comput. Biol. (2021)
Keyphrases
- protein sequences
- pairwise
- sequence alignment
- amino acids
- computational biology
- protein structure
- secondary structure
- markov random field
- protein secondary structure
- multi class
- protein function
- sequence analysis
- amino acid sequences
- coarse grained
- similarity measure
- protein folding
- protein structure prediction
- multiple sequence alignment
- computational approaches