Time and Space Efficient Optimal Pairwise Sequence Alignment using GPU.
Ardhendu SarkarKinjal RayDebaroti ChowdhuryKishan SahuSolanki KunduSurajeet GhoshPublished in: TENCON (2019)
Keyphrases
- sequence alignment
- space efficient
- pairwise
- gpu accelerated
- dynamic programming
- data structure
- sliding window
- data streams
- linear space
- amino acids
- similarity measure
- comparative genomics
- binding sites
- multiple sequence alignment
- real time
- phylogenetic analysis
- suffix array
- bloom filter
- secondary structure
- statistical significance
- nearest neighbor