Optimized phylogenetic clustering of HIV-1 sequence data for public health applications.
Connor ChatoYi FengYuhua RuanHui XingJoshua T. HerbeckMarcia KalishArt F. Y. PoonPublished in: PLoS Comput. Biol. (2022)
Keyphrases
- sequence data
- public health
- sequence analysis
- genome sequences
- sequence classification
- profile hidden markov models
- infectious disease
- policy makers
- k means
- evolutionary history
- national security
- nucleotide sequences
- binding sites
- information systems
- disease outbreaks
- health services
- cluster analysis
- health information
- hidden markov models
- outbreak detection
- databases