Global repeat map algorithm (GRM) reveals differences in alpha satellite number of tandem and higher order repeats (HORs) in human, Neanderthal and chimpanzee genomes - novel tandem repeat database.
Igor VlahovicMatko GluncicKresimir DekanicLeo MrsicHrvoje JerkovicIvica MartinjakVladimir PaarPublished in: MIPRO (2020)
Keyphrases
- higher order
- database
- learning algorithm
- computational complexity
- space complexity
- dynamic programming
- single scan
- preprocessing
- memory requirements
- detection algorithm
- k means
- optimization algorithm
- database systems
- worst case
- databases
- statistically significant
- segmentation algorithm
- simulated annealing
- probabilistic model
- search space
- pairwise
- cost function
- convergence rate
- sequence alignment
- candidate generation
- similarity measure
- data sets
- neural network
- np hard
- image sequences