NearTrans Can Identify Correlated Expression Changes Between Retrotransposons and Surrounding Genes in Human Cancer.
Rafael LarrosaMacarena ArroyoRocío BautistaCarmen María López-RodríguezM. Gonzalo ClarosPublished in: IWBBIO (1) (2018)
Keyphrases
- gene expression levels
- binding sites
- differential expression
- gene selection
- gene expression
- microarray
- gene expression profiles
- microarray data
- tandem repeats
- expression profiles
- cancer classification
- dna sequences
- dna microarray
- gene sets
- high throughput
- gene expression data
- transcription factor binding sites
- genome wide
- colon cancer
- cancer diagnosis
- gene expression datasets
- data sets
- statistical significance
- sequence data
- long range
- biological sequences
- variable length
- tissue samples
- breast cancer
- feature selection
- experimental conditions
- single nucleotide polymorphisms
- highly correlated
- evolutionary history
- cell lines
- post processing
- candidate genes
- database