Searching RNA motifs and their intermolecular contacts with constraint networks.
Patricia ThébaultSimon de GivryThomas SchiexChristine GaspinPublished in: Bioinform. (2006)
Keyphrases
- constraint networks
- structural motifs
- tree decomposition
- temporal reasoning
- constraint satisfaction
- temporal constraint networks
- constraint satisfaction problems
- path consistency
- genome sequences
- set intersection
- constraint programming
- cis regulatory
- tree width
- series parallel
- dna sequences
- arc consistency
- protein sequences
- backtracking algorithm
- motif discovery
- rna sequences
- human genome
- temporal constraints
- qualitative and quantitative
- genome wide