QColors: An algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads.
Austin HuangRami KantorAllison DeLongLeeann SchreierSorin IstrailPublished in: Silico Biol. (2012)
Keyphrases
- detection algorithm
- dynamic programming
- high accuracy
- similarity measure
- preprocessing
- experimental evaluation
- theoretical analysis
- optimal solution
- cost function
- optimization algorithm
- probabilistic model
- computational cost
- convergence rate
- improved algorithm
- objective function
- learning algorithm
- times faster
- image reconstruction
- clustering method
- data sets
- reconstruction process
- expectation maximization
- particle swarm optimization
- simulated annealing
- worst case
- search space
- lower bound
- three dimensional