Compact architecture for high-throughput regular expression matching on FPGA.
Yi-Hua E. YangWeirong JiangViktor K. PrasannaPublished in: ANCS (2008)
Keyphrases
- high throughput
- regular expressions
- pattern matching
- approximate matching
- matching algorithm
- string matching
- data acquisition
- genome wide
- biological data
- microarray
- hardware architecture
- systems biology
- real time
- hardware implementation
- genomic data
- proteomic data
- high speed
- field programmable gate array
- mass spectrometry
- low cost
- mass spectrometry data
- edit distance
- protein protein interactions
- low latency
- dna sequencing
- microarray data
- query evaluation
- data collection
- data processing
- object oriented
- knowledge base
- machine learning