Exploiting Coarse-Grained Parallelism to Accelerate Protein Motif Finding with a Network Processor.
Ben WunJeremy BuhlerPatrick CrowleyPublished in: IEEE PACT (2005)
Keyphrases
- coarse grained
- fine grained
- protein sequences
- multithreading
- motif finding
- contact maps
- shared memory
- biological sequences
- protein folding
- computational biology
- amino acids
- motif discovery
- protein interaction networks
- amino acid sequences
- similarity measure
- high level
- data mining
- protein structure
- message passing
- pairwise
- hiv protease
- information retrieval