A Replica Exchange Monte Carlo Algorithm for the Optimization of Secondary Structure Packing in Proteins.
Leonidas KapsokalivasKathleen SteinhöfelPublished in: EvoBIO (2010)
Keyphrases
- monte carlo
- importance sampling
- dynamic programming
- secondary structure
- markov chain
- adaptive sampling
- learning algorithm
- protein structure
- computational methods
- multiple sequence alignment
- matrix inversion
- least squares
- expectation maximization
- protein sequences
- monte carlo methods
- rna secondary structure prediction