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An Exhaustive Genome Assembly Algorithm Using K-Mers to Indirectly Perform N-Squared Comparisons in O(N).
Maulik K. Shah
HoJoon Lee
Stephanie A. Rogers
Jeffrey W. Touchman
Published in:
CSB (2004)
Keyphrases
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detection algorithm
learning algorithm
computational complexity
optimal solution
preprocessing
experimental evaluation
improved algorithm
selection algorithm
expectation maximization
input data
computational cost
similarity measure
np hard
times faster
high accuracy
simulated annealing
tree structure
theoretical analysis
optimization algorithm
objective function
genetic algorithm
convex hull
classification algorithm
euclidean distance
ant colony optimization
data structure
search space
worst case
probabilistic model
multi objective
cost function
dynamic programming