Predicting protein-protein relationships from literature using collapsed variational latent dirichlet allocation.
Tatsuya AsouKoji EguchiPublished in: DTMBIO (2008)
Keyphrases
- predicting protein
- latent dirichlet allocation
- collapsed gibbs sampling
- topic models
- secondary structure
- protein protein interactions
- gibbs sampling
- approximate inference
- generative model
- protein interaction
- protein function
- variational inference
- lda model
- variational methods
- biomedical literature
- text mining
- amino acid sequences
- feature space
- image segmentation
- protein interaction networks
- computational methods
- amino acids
- gaussian process
- bayesian inference
- parameter estimation
- latent variables