FPGA Acceleration of Protein Back-Translation and Alignment.
Sahand SalamatJaeyoung KangYeseong KimMohsen ImaniNiema MoshiriTajana RosingPublished in: DATE (2021)
Keyphrases
- sequence alignment
- multiple sequence alignment
- protein structure alignment
- word alignment
- protein sequences
- remote homology detection
- machine translation
- protein structure
- hardware implementation
- real time
- amino acids
- statistical machine translation
- real time image processing
- field programmable gate array
- machine translation system
- multiple sequence alignments
- sentence pairs
- protein structure prediction
- molecular dynamics
- contact map
- word level
- protein function
- pairwise
- hardware design
- low cost
- high speed
- cross language information retrieval
- signal processing
- efficient implementation
- rna secondary structures
- fpga implementation
- query translation
- image alignment
- computational biology
- protein folding
- protein protein interactions
- parallel corpora
- psi blast
- data acquisition
- subcellular localization
- secondary structure
- smith waterman