Protein structure similarity detection using alignment of secondary structure elements and their geometric properties.
Dobrinka PetrovaStoicho D. StoichevPublished in: CompSysTech (2007)
Keyphrases
- protein structure
- geometric properties
- secondary structure
- protein structure alignment
- protein sequences
- rna sequences
- molecular biology
- amino acid sequences
- predicting protein
- protein secondary structures
- contact map
- structural features
- protein structure prediction
- psi blast
- tertiary structure
- rna secondary structures
- amino acids
- solvent accessibility
- similarity measure
- sequence alignment
- geometric constraints
- nuclear magnetic resonance
- computational approaches
- protein protein
- protein function
- protein folding
- protein backbone
- distance measure
- semantic similarity