PEP_scaffolder: using (homologous) proteins to scaffold genomes.
Bai-Han ZhuYing-Nan SongWei XueGui-Cai XuJun XiaoMing-Yuan SunXiaowen SunJiongtang LiPublished in: Bioinform. (2016)
Keyphrases
- comparative analysis
- protein function
- sequence analysis
- protein sequences
- sequence alignment
- phylogenetic trees
- sequenced genomes
- amino acids
- genomic data
- amino acid sequences
- protein protein interactions
- protein structure
- protein families
- sequence data
- phylogenetic analysis
- protein coding regions
- protein structure prediction
- functional modules
- comparative genomics
- horizontal gene transfer
- protein interaction networks
- computational methods
- computational biology
- human genome
- dna sequences
- protein folding
- genome sequencing
- subcellular localization
- gene ontology
- protein protein interaction networks
- biological processes
- protein interaction data
- genomic sequences
- chemical compounds
- interaction networks
- living cells
- protein interaction
- protein complexes