ASmodeler: gene modeling of alternative splicing from genomic alignment of mRNA, EST and protein sequences.
Namshin KimSeokmin ShinSanghyuk LeePublished in: Nucleic Acids Res. (2004)
Keyphrases
- alternative splicing
- protein sequences
- sequence data
- splice site
- sequence analysis
- human genome
- genome sequences
- nucleotide sequences
- secondary structure
- biological sequences
- multiple sequence alignment
- sequence alignment
- multiple alignment
- gene prediction
- high throughput
- genome wide
- rna seq
- essential genes
- computational biology
- molecular biology
- rna sequences
- psi blast
- dna sequences
- sequence databases
- amino acid sequences
- biological data
- multiple sequence alignments
- amino acids
- structural motifs
- computational approaches
- protein structure
- protein classification
- protein structure prediction
- high throughput sequencing
- microarray
- remote homology detection
- protein function
- binding sites
- gene expression
- genomic data
- regulatory networks
- suffix tree