ISMatch: A real-time hardware accelerator for inexact string matching of DNA sequences on FPGA.
Alberto MarchisioFederico TeodonioAntonello RizziMuhammad ShafiquePublished in: Microprocess. Microsystems (2023)
Keyphrases
- dna sequences
- string matching
- real time
- field programmable gate array
- low cost
- fpga implementation
- fpga device
- dedicated hardware
- hardware implementation
- pattern matching
- fpga hardware
- fpga technology
- general purpose processors
- tandem repeats
- pipelined architecture
- embedded systems
- hardware architecture
- edit distance
- hardware design
- parallel computing
- human genome
- data acquisition
- high speed
- computing systems
- dna computing
- xilinx virtex
- motif discovery
- genomic sequences
- coding regions
- regular expressions
- sequence patterns
- binding sites
- image processing algorithms
- relational databases
- image processing