NASP: a parallel program for identifying evolutionarily conserved nucleic acid secondary structures from nucleotide sequence alignments.
J. Y. SemegniMark WamalwaR. GaujouxG. W. HarkinsA. GrayD. P. MartinPublished in: Bioinform. (2011)
Keyphrases
- rna sequences
- secondary structure
- sequence alignment
- multiple sequence alignment
- protein sequences
- multiple alignment
- rna secondary structure prediction
- dna sequences
- rna secondary structures
- sequence similarity
- free energy
- protein structure
- amino acids
- coding regions
- protein folding
- rna molecules
- computational methods
- pairwise
- secondary structure of proteins
- amino acid sequences
- comparative genomics
- structural features
- computational biology
- protein coding regions
- psi blast
- dynamic programming