PSIST: A scalable approach to indexing protein structures using suffix trees.
Feng GaoMohammed Javeed ZakiPublished in: J. Parallel Distributed Comput. (2008)
Keyphrases
- protein structure
- suffix tree
- indexing structure
- string matching
- data structure
- molecular biology
- secondary structure
- protein sequences
- inverted index
- indexing method
- protein structure prediction
- pattern matching
- protein tertiary structure
- disk resident
- information retrieval
- amino acid sequences
- suffix array
- amino acids
- protein function
- database
- protein structure and function
- sequence analysis
- nuclear magnetic resonance
- coarse grained
- string kernels
- index structure
- language model
- graph databases
- document retrieval
- similarity search
- database systems
- experimentally determined