PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem.
Erfan Sadeqi AzerFarid Rashidi MehrabadiSalem MalikicXuan Cindy LiOsnat BartokKevin LitchfieldRonen LevyYardena SamuelsAlejandro A. SchäfferE. Michael GertzChi-Ping DayEva Pérez-GuijarroKerrie MarieMaxwell P. LeeGlenn MerlinoFunda ErgünSüleyman Cenk SahinalpPublished in: Bioinform. (2020)
Keyphrases
- branch and bound algorithm
- branch and bound
- lower bound
- search algorithm
- randomly generated
- optimal solution
- upper bound
- test problems
- randomly generated problems
- column generation
- combinatorial optimization
- search tree
- precedence constraints
- lower bounding
- search space
- mixed integer linear programming
- single machine scheduling problem
- max sat
- upper bounding
- branch and bound method
- np hard
- lagrangian relaxation
- breast cancer
- network design problem
- variable ordering
- maximum clique
- linear programming relaxation
- lower and upper bounds
- objective function
- simulated annealing
- metaheuristic