Haplotype-Aware Sequence Alignment to Pangenome Graphs.
Ghanshyam ChandraDaniel GibneyChirag JainPublished in: RECOMB (2024)
Keyphrases
- sequence alignment
- pairwise
- dynamic programming
- gpu accelerated
- protein sequences
- phylogenetic analysis
- binding sites
- graph theory
- graph theoretic
- sequence data
- multiple alignment
- multiple sequence alignment
- protein structure
- protein structure prediction
- amino acids
- comparative genomics
- data sets
- computational biology
- graph mining
- high dimensional
- haplotype inference
- machine learning