BBH-LS: an algorithm for computing positional homologs using sequence and gene context similarity.
Melvin ZhangHon Wai LeongPublished in: BMC Syst. Biol. (2012)
Keyphrases
- similarity measure
- preprocessing
- similarity function
- probabilistic model
- learning algorithm
- distance function
- cost function
- context aware
- detection algorithm
- worst case
- computational cost
- experimental evaluation
- dynamic programming
- np hard
- k means
- computational complexity
- convergence rate
- data sets
- similarity search
- sequence alignment
- expectation maximization
- particle swarm optimization
- search space
- optimal solution
- neural network
- input data
- simulated annealing
- matching algorithm
- objective function