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Design and implementation of a hybrid MPI-CUDA model for the Smith-Waterman algorithm.

Heba KhaledHossam El Deen Mostafa FaheemRania El-Gohary
Published in: Int. J. Data Min. Bioinform. (2015)
Keyphrases
  • parallel implementation
  • objective function
  • input data
  • similarity measure
  • np hard
  • dynamic programming
  • k means
  • expectation maximization
  • optimal solution
  • tree structure
  • log likelihood
  • smith waterman