Extraction of protein-protein interactions using natural language processing based pattern matching.
Kaixian YuTingting ZhaoPeixiang ZhaoJinfeng ZhangPublished in: BIBM (2017)
Keyphrases
- pattern matching
- protein protein interactions
- natural language processing
- information extraction
- computational methods
- predicting protein protein interactions
- gene ontology
- high throughput
- regular expressions
- protein interaction
- string matching
- pattern matching algorithm
- functional modules
- network topology
- genomic data
- machine learning
- protein complexes
- wordnet
- protein interaction networks
- high precision
- approximate pattern matching
- biological data
- natural language
- structural properties
- text mining
- computational biology
- network analysis
- information retrieval
- protein interaction data
- automatic extraction
- data mining
- boyer moore
- semantic relations
- sensor networks
- data model
- relational databases
- network structure