SeAlM: A Query Cache Optimization Technique for Next Generation Sequence Alignment.
Evan SteneFarnoush Banaei KashaniPublished in: ICDM Workshops (2019)
Keyphrases
- sequence alignment
- query processing
- multiple queries
- pairwise
- query result
- range queries
- response time
- database
- dynamic programming
- relevance feedback
- sequence databases
- user queries
- retrieval systems
- protein sequences
- prefetching
- gpu accelerated
- multiple sequence alignment
- machine learning
- index structure
- query expansion
- keywords
- binding sites
- amino acids
- feature selection
- comparative genomics
- phylogenetic analysis
- caching strategies