Exploring the dynamics of large-scale gene regulatory networks using hardware acceleration on a heterogeneous CPU-FPGA platform.
Lucas B. da SilvaDanilo Damião AlmeidaJosé Augusto Miranda NacifIsmael Sanchez-OsorioCarlos A. Hernandez-MartinezRicardo FerreiraPublished in: ReConFig (2017)
Keyphrases
- gene regulatory networks
- reconfigurable hardware
- field programmable gate array
- low cost
- hardware implementation
- real time
- gene regulatory
- hardware architecture
- reverse engineering
- network model
- gene expression data
- genetic regulatory networks
- gene networks
- regulatory networks
- boolean networks
- gene regulation
- biological data
- dynamic bayesian networks
- data acquisition
- high speed
- bayesian inference
- structure learning
- graphics processing units
- embedded systems
- nearest neighbor
- gene expression
- microarray
- data management
- object oriented