HOPE: A Homotopy Optimization Method for Protein Structure Prediction.
Daniel M. DunlavyDianne P. O'LearyDmitri KlimovD. ThirumalaiPublished in: J. Comput. Biol. (2005)
Keyphrases
- optimization method
- protein structure prediction
- optimization algorithm
- protein sequences
- optimization methods
- evolutionary algorithm
- protein structure
- protein homology
- optimization process
- drug design
- protein fold recognition
- graph theory
- genetic algorithm
- differential evolution
- computational biology
- global optimum
- optimization procedure
- simulated annealing
- particle swarm
- coarse grained
- amino acids
- metaheuristic
- protein folding
- nonlinear optimization
- secondary structure
- multi objective
- nelder mead simplex
- quasi newton
- bayesian networks
- search algorithm