PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences.
Saurabh SinhaMathieu BlanchetteMartin TompaPublished in: BMC Bioinform. (2004)
Keyphrases
- computational complexity
- probabilistic model
- detection algorithm
- expectation maximization
- search space
- k means
- optimal solution
- hidden markov models
- dynamic programming
- computational cost
- optimization algorithm
- worst case
- context free parsing
- frequent sequences
- tree structure
- generative model
- particle swarm optimization
- simulated annealing
- bayesian networks
- objective function