Pairwise Protein Substring Alignment with Latent Semantic Analysis and Support Vector Machines to Detect Remote Protein Homology.
Surayati IsmailRazib M. OthmanShahreen KasimPublished in: UCMA (2) (2011)
Keyphrases
- latent semantic analysis
- protein homology
- pairwise
- sequence alignment
- protein structure prediction
- support vector
- co occurrence
- information retrieval
- singular value decomposition
- protein sequences
- latent semantic indexing
- visual words
- protein structure
- text summarization
- computational biology
- support vector machine
- feature selection
- topic modeling
- tf idf
- amino acids
- document clustering
- statistical significance
- markov random field
- similarity measure
- machine learning
- training data
- knowledge discovery