Finding Short DNA Motifs Using Permuted Markov Models.

Xiaoyue Zhao Haiyan Huang Terence P. Speed

Published in: J. Comput. Biol. (2005)

Keyphrases

markov models
dna sequences
markov model
maximum entropy
higher order
hidden markov models
hidden state
biological sequences
sequence classification
conditional random fields
motif discovery
binding sites
machine learning
prior knowledge
reinforcement learning
sequence prediction