High-performance data structures for de novo assembly of genomes: cache oblivious generic programming.
Franco MilicchioGiuseppe TradigoPierangelo VeltriMattia C. F. ProsperiPublished in: BCB (2016)
Keyphrases
- data structure
- human genome
- main memory
- genomic sequences
- embedded processors
- sequence data
- hash table
- comparative analysis
- dna sequences
- genome wide
- programming language
- prefetching
- programming course
- data types
- sequence analysis
- graphics processing units
- rna secondary structures
- hit rate
- tandem mass spectra
- efficient data structures
- high level
- genome sequences
- programming environment
- computer programming
- suffix tree
- database management systems