Approximate symbolic pattern matching for protein sequence data.
Bill C. H. ChangSaman K. HalgamugePublished in: Int. J. Approx. Reason. (2003)
Keyphrases
- pattern matching
- sequence data
- sequence analysis
- nucleotide sequences
- regulatory elements
- genome sequences
- sequence databases
- sequence classification
- pattern matching algorithm
- profile hidden markov models
- binding sites
- biological sequences
- matching process
- regular expressions
- dna binding
- graph matching
- amino acids
- boyer moore
- protein protein interactions
- string matching
- sequence alignment
- hamming distance
- exact and approximate
- protein sequences
- bit parallel
- high throughput
- information extraction