Parallelization of Global Sequence Alignment on Graphics Processing Unit.
Kailash W. KalareMohammad S. ObaidatJitendra V. TembhurneChandrashekhar MeshramKuei-Fang HsiaoPublished in: CCCI (2020)
Keyphrases
- sequence alignment
- graphics processing units
- parallel computation
- gpu implementation
- parallel execution
- pairwise
- graphics hardware
- parallel processing
- general purpose
- protein sequences
- shared memory
- parallel computing
- massively parallel
- message passing interface
- amino acids
- multiple sequence alignment
- parallel programming
- dynamic programming
- compute unified device architecture
- real time
- binding sites
- comparative genomics
- parallel algorithm
- fine grained
- multiple alignment
- message passing
- peer to peer
- distributed systems
- integral histogram