Practical regular expression constrained sequence alignment.
Lise Rommel Romero NavarreteGuilherme P. TellesPublished in: Theor. Comput. Sci. (2020)
Keyphrases
- sequence alignment
- regular expressions
- pattern matching
- finite automata
- pairwise
- semistructured data
- dynamic programming
- query language
- xml schema
- protein sequences
- comparative genomics
- matching algorithm
- deterministic finite automata
- multiple alignment
- machine learning
- binding sites
- phylogenetic analysis
- multiple sequence alignment
- relational databases
- data warehouse
- amino acids
- structured data