RNAG: a new Gibbs sampler for predicting RNA secondary structure for unaligned sequences.
Donglai WeiLauren V. AlpertCharles E. LawrencePublished in: Bioinform. (2011)
Keyphrases
- rna secondary structures
- gibbs sampler
- rna sequences
- secondary structure
- posterior distribution
- bayesian inference
- edit distance
- free energy
- stochastic context free grammars
- random fields
- gibbs sampling
- markov chain
- dna sequences
- protein sequences
- probability distribution
- approximate inference
- hidden markov models
- hyperparameters
- latent dirichlet allocation
- topic models