Serpentine: a flexible 2D binning method for differential Hi-C analysis.
Lyam BaudryGaël A. MillotAgnes ThierryRomain KoszulVittore F. ScolariPublished in: Bioinform. (2020)
Keyphrases
- detection method
- significant improvement
- high precision
- quantitative analysis
- learning algorithm
- pairwise
- main contribution
- theoretical analysis
- experimental evaluation
- computational cost
- optimization algorithm
- computationally efficient
- synthetic data
- energy function
- segmentation method
- mathematical model
- fully automatic
- support vector machine svm
- data sets
- bit rate
- statistical analysis
- dynamic programming
- cost function
- multiresolution
- computational complexity
- neural network