A cost-aggregating integer linear program for motif finding.
Carl KingsfordElena ZaslavskyMona SinghPublished in: J. Discrete Algorithms (2011)
Keyphrases
- linear program
- motif finding
- linear programming
- average cost
- semi infinite
- optimal solution
- dynamic programming
- objective function
- biological sequences
- np hard
- mixed integer
- mixed integer linear program
- motif discovery
- memetic algorithm
- decision variables
- pairwise
- statistical analysis
- scheduling problem
- cost function
- high dimensional
- search algorithm
- genetic algorithm