A linear programming approach for identifying a consensus sequence on DNA sequences.
Han-Lin LiChang-Jui FuPublished in: Bioinform. (2005)
Keyphrases
- dna sequences
- linear programming
- sequence patterns
- genomic sequences
- biological sequences
- protein coding regions
- rna sequences
- tandem repeats
- dna sequencing
- human genome
- linear program
- transcription factor binding sites
- coding regions
- dynamic programming
- dna computing
- protein families
- motif discovery
- objective function
- binding sites
- transcription factors
- np hard
- gene structure prediction
- pattern discovery
- machine learning
- problems in computational biology