Specific alignment of structured RNA: stochastic grammars and sequence annealing.
Robert K. BradleyLior PachterIan H. HolmesPublished in: Bioinform. (2008)
Keyphrases
- rna secondary structures
- stochastic context free grammars
- rna sequences
- sequence alignment
- rna secondary structure prediction
- bayesian networks
- hidden markov models
- multiple alignment
- high level
- domain specific
- simulated annealing
- monte carlo
- secondary structure
- context free grammars
- sequence analysis
- tree grammars
- genomic sequences
- multiple sequence alignment
- free energy
- context dependent
- protein sequences
- pairwise
- similarity measure